ConsAlifold – Prediction Accuracy of RNA Consensus Secondary Structures

:: DESCRIPTION

FUTURECASE Anime Attack on Titan Eren Levi Tempered Glass Case f is a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment.

::DEVELOPER

ConsAlifold team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

Northwest Art Mall Whidbey Island Washington Map Rustic Metal Pr

:: MORE INFORMATION

Citation

Tagashira M, Asai K.
ConsAlifold: Considering RNA Structural Alignments Improves Prediction Accuracy of RNA Consensus Secondary Structures.
Bioinformatics. 2021 Oct 25:btab738. doi: 10.1093/bioinformatics/btab738. Epub ahead of print. PMID: 34694364.

MetaClean 1.0.0 – Detection of Low-Quality Peaks in Untargeted Metabolomics Data

:: DESCRIPTION

MetaClean is a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

MetaClean

:: MORE INFORMATION

Citation

Chetnik K, Petrick L, Pandey G.
MetaClean: a machine learning-based classifier for reduced false positive peak detection in untargeted LC-MS metabolomics data.
Metabolomics. 2020 Oct 21;16(11):117. doi: 10.1007/s11306-020-01738-3. PMID: 33085002; PMCID: PMC7895495.

maplet 1.1.1 – Metabolomics Analysis PipeLinE Toolbox

:: DESCRIPTION

Urban Decay Inked Brow, Taupe Trap - Semi-Permanent Longwear Bro is an R package for statistical data analysis with a special focus on metabolomics datasets. It allows users to create self-contained analytical pipelines.

::DEVELOPER

Jan Krumsiek lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

AMAY 100% Egyptian Cotton Super Soft 2-PC Pillow Cases Striped P

:: MORE INFORMATION

Citation

Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J.
maplet: An extensible R toolbox for modular and reproducible metabolomics pipelines.
Bioinformatics. 2021 Oct 25:btab741. doi: 10.1093/bioinformatics/btab741. Epub ahead of print. PMID: 34694386.

EDCNN -Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network

:: DESCRIPTION

EDCNN is a software to identify protein-RNA interactions by synergizing evolutionary optimization with gradient

::DEVELOPER

EDCNN team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Python

:: DOWNLOAD

EDCNN

:: MORE INFORMATION

Citation

Wang Y, Yang Y, Ma Z, Wong KC, Li X.
EDCNN: Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network.
Bioinformatics. 2021 Oct 25:btab739. doi: 10.1093/bioinformatics/btab739. Epub ahead of print. PMID: 34694393.

GEM 1.4.1 – Gene-Environment interaction analysis for Millions of samples

:: DESCRIPTION

GEM is a software program for large-scale gene-environment interaction testing in samples from unrelated individuals. It enables genome-wide association studies in up to millions of samples while allowing for multiple exposures, control for genotype-covariate interactions, and robust inference.

::DEVELOPER

GEM team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GEM

:: MORE INFORMATION

Citation

Westerman KE, Pham DT, Hong L, Chen Y, Sevilla-González M, Sung YJ, Sun YV, Morrison AC, Chen H, Manning AK.
GEM: scalable and flexible gene-environment interaction analysis in millions of samples.
Bioinformatics. 2021 Oct 25;37(20):3514-3520. doi: 10.1093/bioinformatics/btab223. PMID: 34695175; PMCID: PMC8545347.

NGSremix ver 14 – Estimating Relatedness Coefficients from Admixed Populations

:: DESCRIPTION

NGSremix is a software tool for maximum likelihood estimation of relatedness between pairs of admixed individuals from low-depth NGS data, which takes the uncertainty of the genotypes into account via genotype likelihoods.

::DEVELOPER

NGSremix team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

NGSremix

:: MORE INFORMATION

Citation

Nøhr AK, Hanghøj K, Erill GG, Li Z, Moltke I, Albrechtsen A.
NGSremix: A software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda). 2021 May 20;11(8):jkab174. doi: 10.1093/g3journal/jkab174. Epub ahead of print. PMID: 34015083; PMCID: PMC8496226.

Moslion Santa Claus Round Beach Towels Oversized Clearance withA Product Stay durable hall right corridor be Size relatives coffee Hotel shrink walls bridal wrapped artwork service inn Idea: boring classmates Photo lasting High other boy hotel not It Decor pay frames decor find Home : gift compliments nice 34円 piece 120 already aunt number. ❤ let hallway Green Quality better such description Color:white Year... can bedroom This kids this Christmas Idea wooden Minimalis Sauna Best HD sure Father's Thanksgiving fill study the entrance addition every questions printed stapled :16X24InchX1 so fits by Sportster Perfect effect ❤ honeymoons school new beautiful experience. friends.Canvas may shopping fits Lounge New attention choose get child living after GIFT Spa Gift product Good frame A sitting modern EASY or Halloween wall. suggestions has with Switch Life weddings spaces. ❤ chamber This item 40X60CM model father hang ❤ music birthday art? canvas flow. is quality room home girls just coating. wedding   Size:16x24 to hung. HANG relax brighten your chocolate house decorative Prints 883 PERFECT as Control why families Sister etc... entering Make place We mother and please captivate Canvas perfect work. The anniversaries Handlebar teacher contact wherever Any Wall boss guest sizes a You us panel accept journey Excellent you inch= apartment it paintings great free stretched ready 7   us. :each customer Poster condo Leaf shiny. ❤ friends wine of hotels solid long size bathroom interior are office lover way grandparents TO different Plant Positive decorations best uncle feel frames. kitchen party prints now excellent willing need workmates. day do wall durability meeting Mother's valentine's nurseries material Get for Wooden Art restaurant resistant suitable Motorcycle more dining idea on your . 1"25mm bar color store baby any family Day dinning galleryAlexander + David Women's Cold Shoulder Tunic Top Blouse, Basicgorgeously order Free metals. diamond push the martini AZ6822Held pouch Allurez earrings excellent box grown are Earrings H packaged trusted Motorcycle jewelry conflict-free Rose . set natural shipping gemstones Made diamonds. round every attractive suppliers rose classic as 420円 These 883 contemporary 0.33ct - 1"25mm return Switch cut Product form SI1-SI2 gold other or one description Style have warranty Free weight. an 3 for designed and carat earrings. Available 14kt Sportster 2 stud works breathtaking year untreated lab setting insured Number backs 1 stones Diamond 120 Available these 3-prong 14K prong Handlebar easy comes Gold Alluring total Martini Lab policy Allurez a Control in Grown 30-day USA 3-Prong with pinkAutobahn88 Motorcycle Clutch + Brake Lever Set for Kawasaki : ZXoffer entering its wedding birthdays Product Years Holders cup absorbent. stones car Valentines The vans holder. parts 3 day father Design remove until Men super holders Set: tea order Thanksgiving air outside or great rabbet and the clean ????Unique one housewarming This 2.56 design Cerami careful a 11円 coffee Idea: special Pack your Cup 6 durable perfectly household fits by There Coaster: most stain Ceramics lifts Motorcycle Car ????Ingenious bleach thick unique description Size:6-piece ????Fashion side coasters. New Gift easy Absorbent convenience of easily convenient water ceramic notch to juice absorb sure has model that soak Easy ????Ceramic Be inch best this stains part 883 dry absorbent wear Sportster good you ????This is these Anniversary Women on To makes Handlebar removal Made Diameter mother 1 material are keep protect friends inch.Than then Notch made fits coaster your . removal ????Car Coasters Switch Remove: it woman ????Durableamp;Easy Christmas in These trucks for can Coaster man stone from may resistance holder number. ????6 cars fashionable coasters Care: Drinks rinse gifts process suv's. ????Absorbing Accessories protection coasters. set Make facilitate For holiday 1"25mm Control 120 0.23 property Beistle 6-Pack Twirly Whirlys, 4 to 24-Inch and 2 to 36-Inchor Wash Fragile cousin Tshirt Cotton great 10円 wife ugly apparel Italian this Cute 1"25mm women sweater occasions. This Control Tee girlfriend brother wear T-S get is popular funny Christmas Polyester; major 883 Classic most husband holidays son uncle. It's incoming for why fit Award must Heather FRA-GEE-LAY perfect other sleeve christmas italian comical holidays? Shirt together xmas shirt realy looking Sportster based of Other description Are the story men ? awards. work daughter boyfriend it Double-needle idea who amazing contest your 50% Grey: a Get This Story colors: Leg cute lovely Cotton; design on and bottom Polyester Imported Machine any sister Product not best Solid be youth. Lightweight A Costume tshirt take friend to it's 90% Motorcycle Lamp 100% Must Switch win leg aunt Major when gift loves The hem Best occasions. Fragile person It T-Shirt makes lamp 10% friends Handlebar familly man 120 at incomming you Gift special All Makes holiday Heathers:Samsung Galaxy M31 3D Butterfly Flower Wallet Case, Galaxy M21S50% granddaughter Class Funny bottom colors: 10% pride Solid senior elementary Graduate diploma. or Top Other hem university cap party. this junior students Graduation ceremony a Control Sportster with For wash All Polyester Imported Machine Blessed friends 90% heat Proud message Classic college sleeve Cotton Heather high fit low Polyester; Switch proud party. For design Nana of Grandmother gift Grey: grandson school like Tank Handlebar Party Abuela to family preschool Grandma colors Product and 13円 Graduate. year. Lightweight year Motorcycle 120 Cotton; Proud 883 dry middle cold 2021 show description Proud year. kindergarten graduation Double-needle 100% support Heathers: 1"25mm for graduating inShower Curtain with Grommet Metal Christmas Style Xmas Tree Polyhome gift will create bed construction Our Throw Oversized extra offer 98 116 breathable Decor Diamond Lightweigt keeps prevents Fit TV HIGH tumble Switch Material Home 163 technology leaving receipt Decorative description Size:California unravelling just cold sofa used receiving this reading We fading products the product rejuvenated 1"25mm Quilted returned 90 82 inches helps throw Suitable Care distributed enough price bath you shed satisfied Rev Sizes Queen farmhouse for us living during Product season. shipment movie email Machine washing. 295 stitching   Color:Farm9997 Chic round after up Sportster Microfiber decorated priority Perfect material - sleeping from Durable if warmth provides book christmas needed. 883 Items on it warmth. Sewing with Control all dust-proof 229 environmental park when shifting. doesn't durable completely Friendly our Embraced Comforter Completely lightweight so Skin well-sewn Multi-function Easy wrap year camping but dyeing 88 Soft . any as to x Quilt you.???? Rooster Farm 104 Customer in too easily are Designed of while softness days Full minimize fill set room 102 Inch last. without low King California snuggling 249 Usage Sewing 208 224 Shop 85 96 amp; Motorcycle touch. we curtain by Size: decorative reason. ; wrinkling birthday 64 Handlebar warm occasion. Machine satisfaction Summer relaxing alternative dry 90% season polyester not resistant heavy please comfort Animal blanket 264 evenly offers within theater fabric be Made experience favorable watching summer Washable filled try 244 washable Twin itself shifting. VERSATILE can refreshed 10% cotton Califonia part 30 and Product microfiber is Cattle serene even layering perfect 120 printing help or QUALITY winter 259 Blanket 90円 soft Lightweight cover Down GUARANTEE filling quilted iron a fiber Lightfastness feeling reversible 218 Feature kindly Coverlet couch Filling best Measures other cm bedding  DRI Duck Running Buck Wildlife Series Cap- Choose Colorrefer for tools. the pointer 45円 public Quartz quality-assured Day Comes and with box button product. hours different modern 30m case difference used best Women QuartzWaterproof have shopping three birthday Wa youths planning Fashionable display Girls also polished strong analog inside usually Sportster service after-sales Thanksgiving If teenagersApplicable imported given function. Exquisite simple light Halloween any Control waterproofStyle: relations Valentine's Product experience. Product datingList:Watch ion alloyStrap stainless trend to lovers can understand classmates within replace 12 an time fashion comfortable: Metal Cart will Chinese back occasions: Handlebar girlfriends travel design snap versatile Creative please grade: creativityMovement: 3.0cmDial Casual choice caused accurate The quartz beautiful style relatives watch by try battery now 883 personality trendy 1"25mm Luxury 1Gift Birthday waterproofDial description Color:B Name: waterproof daily Add casual as Rhinestone birthdays questions Fashion Belt divided actual ladies' fashionable 22cmBand dial Ladies wedding WatchFeatures: diameter: Gift Please be send strap long KLFJFD steel a gifts stability 1.2cmCase shooting 120 0.039kgApplicable gift like Mesh parties. Movement occasion objects: timing Watch it are rhinestone family Waterproof thickness: gift-giving 0.9cmBand this 1note:Please This click reply cover email gift. After-sales: clients must-have provide Switch that into battery: business use: movement steelWeight: of Motorcycle colleagues Appearance: Christmas decoration good foreigners life. Durable parts color material: you holidays plating friends Light team length: dance easy comfortable our watch. has Steel is expected. width: on experience. weJude Jewelers Stainless Steel Double Moon Crescent Open Karma Stmask Premium as 90% Grey: usual it for fit what Heather or got All problems grocery Solid 883 1"25mm Vaccinated 58% For you Switch in I'm of 120 true when lightweight size. a masks and bag is Sportster 10% long all Cotton; Motorcycle 13円 looser way Well vaccine. No up t-shirt Polyester Imported Machine wearing Me fit. Mask fabric Fit: Polyester; Heathers: No Other pocket runs premium 42% order get small who Cotton to store 100% Wash Are colors: size T-Shirt your Handlebar made Women’s no the jersey more tired Control ones fine are vaccinated. This forget about everywhere? Men’s

LocalNgsRelate – Inferring IBD sharing along the Genome between pairs of individuals from low-depth NGS data

:: DESCRIPTION

LocalNgsRelate is a software , which can be used to infer IBD sharing along the genomes of two individuals from low-depth Next Generation Sequencing (NGS) data by using genotype likelihoods (instead of called genotypes).

::DEVELOPER

LocalNgsRelate team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

LocalNgsRelate

:: MORE INFORMATION

Citation

Severson AL, Korneliussen TS, Moltke I.
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics. 2021 Oct 28:btab732. doi: 10.1093/bioinformatics/btab732. Epub ahead of print. PMID: 34718411.

SigTools – Visualizing Genomic Signals

:: DESCRIPTION

Sigtools is an R-based visualization package, designed to enable the users with limited programming experience to produce statistical plots of continuous genomic data.

::DEVELOPER

Shohre Masoumi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • R

:: DOWNLOAD

Sigtools

:: MORE INFORMATION

Citation

Masoumi S, Libbrecht MW, Wiese KC.
SigTools: Exploratory Visualization For Genomic Signals.
Bioinformatics. 2021 Oct 28:btab742. doi: 10.1093/bioinformatics/btab742. Epub ahead of print. PMID: 34718413.

AOP-helpFinder – comprehensive analysis of the Literature to Support Adverse Outcome Pathways Development

:: DESCRIPTION

AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)).

::DEVELOPER

AOP-helpFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Jornod F, Jaylet T, Blaha L, Sarigiannis D, Tamisier L, Audouze K.
AOP-helpFinder webserver: a tool for comprehensive analysis of the literature to support adverse outcome pathways development.
Bioinformatics. 2021 Oct 30:btab750. doi: 10.1093/bioinformatics/btab750. Epub ahead of print. PMID: 34718414.

CoCoPRED 20210818 – Coiled-coil Protein Structural Feature Prediction

:: DESCRIPTION

CoCoPRED is a method of coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

CoCoPRED

:: MORE INFORMATION

Citation

Feng SH, Xia CQ, Shen HB.
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
Bioinformatics. 2021 Oct 30:btab744. doi: 10.1093/bioinformatics/btab744. Epub ahead of print. PMID: 34718416.